Monday, April 1, 2019
Comparison On Classification Techniques Using Weka Computer Science Essay
Comparison On compartmentalization Techniques Using wood hen Computer erudition EssayComputers shake brought tremendous improvement in technologies especi tot ein truthyy the pep pill of computing device and reduced info storage cost which lead to bring into being huge volumes of entropy. entropy itself has no value, unless selective information changed to information to become utile. In prehistoric two decade the info dig was invented to generate noesis from informationbase. Presently bioinformatics field created many informationbases, accumulated in speed and mathematical or character entropy is no longer dependent. information solution Management Systems allows the integration of the various high dimensional multimedia data under the same umbrella in distinct areas of bioinformatics.maori hen includes some(prenominal) machine development algorithmic die hardic rules for data digging. wood hen contains general nominate surround motherfuckers for data pre-processing, regression, physical bodyification, standoff rules, globing, frolic weft and visualization. Also, contains an extensive collection of data pre-processing systems and machine knowledge algorithms complemented by GUI for different machine culture techniques experimental comparison and data exploration on the same problem. main(prenominal) features of WEKA is 49 data preprocessing tools, 76 smorgasbord/regression algorithms, 8 clustering algorithms, 3 algorithms for finding association rules, 15 judge/ paladinset evaluators plus 10 search algorithms for feature selection. Main objectives of WEKA are extracting useful information from data and enable to strike a sui arrestle algorithm for generating an accurate predictive baffle from it.This paper presents short notes on data digging, basic principles of data mining techniques, comparison on varianceification techniques victimization WEKA, Data mining in bioinformatics, discussion on WEKA.IntroductionC omputers arrive brought tremendous improvement in technologies especially the speed of computer and data storage cost which lead to create huge volumes of data. Data itself has no value, unless data nominate be changed to information to become useful. In past two decade the data mining was invented to generate knowledge from database. Data Mining is the method of finding the patterns, associations or correlativitys among data to present in a useful format or useful information or knowledge1. The advancement of the healthcare database management systems creates a huge number of data bases. Creating knowledge discovery methodology and management of the larger-than-life amounts of heterogeneous data has become a major priority of seek. Data mining is motionlessness a well area of scientific study and remains a promising and rich field for research. Data mining making sniff out of large amounts of un superintend data in some domain2.Data mining techniquesData mining techniques a re both unsupervised and supervised.Unsupervised erudition technique is not guided by variable or layer label and does not create a model or supposition before depth psychology. Based on the results a model will be built. A common unsupervised technique is Clustering.In Supervised learn prior to the synopsis a model will be built. To predict the parameters of the model apply the algorithm to the data. The bio aesculapian literatures focus on applications of supervised reading techniques. A common supervised techniques utilise in medical and clinical research is Classification, Statistical Regression and association rules. The acquisition techniques soon described below asClusteringClustering is a propulsive field of research in data mining. Clustering is an unsupervised learning technique, is process of partitioning a set of data objects in a set of meaningful subclasses confabulateed clusters. It is revealing natural groupings in the data. A cluster include group of dat a objects similar to each other in spite of appearance the cluster but not similar in another cluster. The algorithms scum bag be categorized into partitioning, hierarchal, density-based, and model-based methods. Clustering is also called unsupervised sort no predefined classes.Association RuleAssociation rule in data mining is to find the kinds of items in a data base.A transaction t contains X, itemset in I, if X t. Where an itemset is a set of items.E.g., X = milk, bread, cereal is an itemset.An association rule is an implication of the formX Y, where X, Y I, and X Y = An association rules do not represent any sort of fountain or correlation amid the two item sets.X Y does not mean X causes Y, so no CausalityX Y faeces be different from Y X, unlike correlationAssociation rules assist in marketing, targeted advertising, floor planning, inventory control, churning management, country of origin security, etc.ClassificationClassification is a supervised learning method . The compartmentalisation goal is to predict the target class accurately for each skid in the data. Classification is to develop accurate description for each class. Classification is a data mining function consists of assigning a class label of objects to a set of unclassified cases.Classification A two-step process show in insure 4.Data mining smorgasbord mechanisms such as stopping point manoeuvers, K-Nearest live (KNN), Bayesian network, Neural networks, blear-eyed logic, Support vector machines, etc. Classification methods classified as followsDecision tree Decision trees are powerful categorization algorithms. Popular last tree algorithms include Quinlans ID3, C4.5, C5, and Breiman et al.s CART. As the name implies, this technique recursively separates observations in branches to bring to pass a tree for the purpose of improving the fortune telling trueness. Decision tree is widely used as it is easy to interpret and are restricted to functions that scum bag be r epresented by rule If-then-else condition. approximately conclusiveness tree classifiers commit classification in two phases tree-growing (or build) and tree- clip. The tree building is do in top-down manner. During this phase the tree is recursively partitioned till all the data items belong to the same class label. In the tree pruning phase the full grown tree is cut back to go on over fitting and improve the accuracy of the tree in bathroom up fashion. It is used to improve the prediction and classification accuracy of the algorithm by minimizing the over-fitting. Compared to other data mining techniques, it is widely applied in various areas since it is robust to data scales or distributions.Nearest-neighborK-Nearest Neighbor is one of the best known distance based algorithms, in the literature it has different adaption such as closest point, single link, complete link, K-Most Similar Neighbor etc. Nearest neighbors algorithm is considered as statistical learning algorit hms and it is exceedingly uncomplicated to implement and leaves itself open to a wide variety of variations. Nearest-neighbor is a data mining technique that performs prediction by finding the prediction value of records (near neighbors) similar to the record to be predicted. The K-Nearest Neighbors algorithm is easy to understand. offshoot the nearest-neighbor list is obtained the test object is classified based on the legal age class from the list. KNN has got a wide variety of applications in various field such as Pattern recognition, Image databases, Internet marketing, Cluster analysis etc.Probabilistic (Bayesian Network) modelsBayesian networks are a powerful probabilistic representation, and their use for classification has received considerable attention. Bayesian algorithms predict the class depending on the probability of belonging to that class. A Bayesian network is a chartical model. This Bayesian Network consists of two components. beginning(a) component is chie fly a directed acyclic interpret (DAG) in which the nodes in the graph are called the random variables and the edges between the nodes or random variables represents the probabilistic dependencies among the interchangeable random variables. Second component is a set of parameters that describe the conditional probability of each variable given its parents. The conditional dependencies in the graph are estimated by statistical and computational methods. Thus the BN combine the properties of computer science and statistics.Probabilistic models Predict multiple hypotheses, weighted by their probabilities3.The submit 1 below gives the theoretical comparison on classification techniques.Data mining is used in surveillance, artificial intelligence, marketing, fraud detection, scientific discovery and now gaining a broad way in other handle also.Experimental WorkExperimental comparison on classification techniques is done in WEKA. Here we subscribe used labor database for all the tri o techniques, easy to differentiate their parameters on a single instance. This labor database has 17 attributes ( attributes like duration, wage-increase-first-year, wage-increase-second-year, wage-increase-third-year, cost-of-living-ad stillment, working-hours, pension, standby-pay, shift-differential, education-allowance, statutory-holiday, vacation, longterm-disability-assistance, contribution-to-dental-plan, bereavement-assistance, contribution-to-health-plan, class) and 57 instances.Figure 5 WEKA 3.6.9 Explorer windowpaneFigure 5 shows the explorer window in WEKA tool with the labor dataset loaded we jackpot also analyze the data in the form of graph as shown above in visualization naval division with blue and red code. In WEKA, all data is considered as instances features (attributes) in the data. For easier analysis and evaluation the simulation results are partitioned into some(prenominal) sub items. First part, correctly and incorrectly classified instances will be par titioned in mathematical and percentage value and subsequently Kappa statistic, mean absolute error and go down mean squared error will be in numeric value only.Figure 6 Classifier ResultThis dataset is measured and analyzed with 10 folds cross validation under specified classifier as shown in approximate 6. Here it computes all required parameters on given instances with the classifiers respective accuracy and prediction rate. Based on Table 2 we preempt all the way see that the highest accuracy is 89.4737 % for Bayesian, 82.4561 % for KNN and lowest is 73.6842 % for Decision tree. In fact by this experimental comparison we can say that Bayesian is best among tercet as it is to a greater extent accurate and less time consuming.Table 2 Simulation Result of each AlgorithmDATA MINING IN BIONFORMATICSBioinformatics and Data mining provide challenging and exciting research for computation. Bioinformatics is conceptualizing biology in terms of molecules and then applying informat ics techniques to understand and organize the information associated with these molecules on a large scale. It is MIS for molecular biology information. It is the science of managing, mining, and version information from biological sequences and structures. Advances such as genome-sequencing initiatives, microarrays, proteomics and in operation(p) and structural genomics have pushed the frontiers of human knowledge. Data mining and machine learning have been advancing with high-impact applications from marketing to science. Although researchers have spent much effort on data mining for bioinformatics, the two areas have largely been developing separately. In classification or regression the task is to predict the import associated with a accompaniment item-by-item given a feature vector describing that individual in clustering, individuals are grouped together because they share certain properties and in feature selection the task is to select those features that are important in predicting the outcome for an individual.We believe that data mining will provide the necessary tools for part understand of gene verbal expression, drug design, and other emerging problems in genomics and proteomics. image novel data mining techniques for tasks such asGene expression analysis,Searching and understanding of protein mass spectroscopy data,3D structural and functional analysis and mining of DNA and protein sequences for structural and functional motifs, drug design, and understanding of the origins of life, andText mining for biological knowledge discovery.In todays world large quantities of data is being accumulated and seeking knowledge from massive data is one of the most fundamental attribute of Data Mining. It consists of more than just collecting and managing data but to analyze and predict also. Data could be large in surface in dimension. Also there is a huge gap from the stored data to the knowledge that could be construed from the data. Here comes the classification technique and its sub-mechanisms to arrange or place the data at its suspend class for ease of identification and searching. Thus classification can be outlined as inevitable part of data mining and is gaining more popity.WEKA data mining softwareWEKA is data mining software developed by the University of Waikato in New Zealand. wood hen includes several machine learning algorithms for data mining tasks. The algorithms can either call from your own Java code or be applied directly to a dataset, since WEKA implements algorithms using the JAVA language. Weka contains general purpose environment tools for data pre-processing, regression, classification, association rules, clustering, feature selection and visualization.The Weka data mining suite in the bioinformatics arena it has been used for probe selection for gene expression arrays14, automated protein annotation79, experiments with automatic cancer diagnosis10, plant genotype discrimination13, classifying ge ne expression profiles11, developing a computational model for frame-shifting sites8 and extracting rules from them12. Most of the algorithms in Weka are described in15.WEKA includes algorithms for learning different types of models (e.g. stopping point trees, rule sets, linear discriminants), feature selection schemes (fast filtering as considerably as wrapper approaches) and pre-processing methods (e.g. discretization, arbitrary mathematical transformations and combinations of attributes). Weka makes it easy to correspond different solution strategies based on the same evaluation method and identify the one that is most appropriate for the problem at hand. It is use in Java and runs on almost any computing platform.The Weka ExplorerExplorer is the main interface in Weka, shown in figure 1. Open file load data in various formats ARFF, CSV, C4.5, and Library.WEKA Explorer has six (6) tabs, which can be used to perform a certain task. The tabs are shown in figure 2.Preprocess Pre processing tools in WEKA are called Filters. The Preprocess retrieves data from a file, SQL database or URL (For very large datasets sub sampling may be required since all the data were stored in main memory). Data can be preprocessed using one of Wekas preprocessing tools. The Preprocess tab shows a histogram with statistics of the currently selected attribute. Histograms for all attributes can be viewed simultaneously in a separate window. Some of the filters behave differently depending on whether a class attribute has been set or not. Filter box is used for setting up the required filter. WEKA contains filters for Discretization, normalization, resampling, attribute selection, attribute combination, kick downstairs Classify tools can be used to perform further analysis on preprocessed data. If the data demands a classification or regression problem, it can be processed in the Classify tab. Classify provides an interface to learning algorithms for classification and regression mo dels (both are called classifiers in Weka), and evaluation tools for analyzing the outcome of the learning process. Classification model produced on the full trained data. WEKA consists of all major learning techniques for classification and regression Bayesian classifiers, decision trees, rule sets, support vector machines, logistic and multi-layer perceptrons, linear regression, and nearest-neighbor methods. It also contains metalearners like bagging, stacking, boosting, and schemes that perform automatic parameter tuning using cross-validation, cost-sensitive classification, etc. Learning algorithms can be evaluated using cross-validation or a hold-out set, and Weka provides standard numeric performance measures (e.g. accuracy, root mean squared error), as well(p) as pictorial means for visualizing classifier performance (e.g. ROC curves and precision-recall curves). It is possible to discover the predictions of a classification or regression model, enabling the identification of outliers, and to load and save models that have been generated.Cluster WEKA contains clusterers for finding groups of instances in a datasets. Cluster tools gives memory access to Wekas clustering algorithms such as k-means, a heuristic incremental hierarchical clustering scheme and mixtures of normal distributions with diagonal co-variance matrices estimated using EM. Cluster assignments can be visualized and compared to actual clusters defined by one of the attributes in the data.Associate Associate tools having generating association rules algorithms. It can be used to identify relationships between groups of attributes in the data.Select attributes More interesting in the circumstance of bioinformatics is the fifth tab, which offers methods for identifying those subsets of attributes that are predictive of another (target) attribute in the data. Weka contains several methods for searching through the space of attribute subsets, evaluation measures for attributes and attribu te subsets. Search methods such as best-first search, genetic algorithms, forward selection, and a childlike ranking of attributes. Evaluation measures include correlation- and entropy based criteria as well as the performance of a selected learning scheme (e.g. a decision tree learner) for a particular subset of attributes. Different search and evaluation methods can be combined, making the system very flexible.Visualize Visualization tools shows a matrix of scatter plots for all pairs of attributes in the data. Practically visualization is very much useful which helps to determine learning problem difficulties. WEKA visualize single dimension (1D) for single attributes and two-dimension (2D) for pairs of attributes. It is to visualize the current relation in 2D plots. Any matrix element can be selected and magnified in a separate window, where one can zoom in on subsets of the data and retrieve information about individual data points. A Jitter option to deal with nominal attrib utes for exposing obscured data points is also provided.interfaces to WekaAll the learning techniques in Weka can be accessed from the simple command line (CLI), as part of shell scripts, or from at bottom other Java programs using the Weka API. WEKA commands directly fill using CLI.Weka also contains an alternative graphical user interface, called acquaintance Flow, that can be used instead of the Explorer. Knowledge Flow is a drag-and-drop interface and supports incremental learning. It caters for a more process-oriented view of data mining, where individual learning components (represented by Java beans) can be connected diagrammatically to create a flow of information.Finally, there is a third graphical user interface-the Experimenter-which is designed for experiments that compare the performance of (multiple) learning schemes on (multiple) datasets. Experiments can be distributed across multiple computers running remote experiment servers and conducting statistical tests be tween learning scheme.ConclusionClassification is one of the most popular techniques in data mining. In this paper we compared algorithms based on their accuracy, learning time and error rate. We observed that, there is a direct relationship between execution time in building the tree model and the volume of data records and also there is an indirect relationship between execution time in building the model and attribute size of the data sets. Through our experiment we conclude that Bayesian algorithms have good classification accuracy over above compared algorithms. To make bioinformatics lively research areas broaden to include new techniques.